roastgsa vignette (gene set collections)3 years ago
Installation | Using gene set collections for battery testing | Gene set collections | Usage of Hallmarks in another example with real data | sessionInfo | References
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roastgsa vignette (main)3 years ago
Installation | Paper associated to R package | Data: array experiment from GSEABenchmarkeR | Gene set enrichment analysis using roastgsa | Data treatment | Model setting | Visualization of the results | Effective signature size | Functions to present the results | Single sample GSA | sessionInfo | References
roastgsa vignette (RNAseq)3 years ago
Installation | roastgsa in RNA-seq data | Data: RNA-seq experiment from GSEABenchmarkeR | Data normalization and filtering | Gene sets | Enrichment analysis | Visualization of the results | sessionInfo | References
Meta cohort survival data mcsurvdata package8 years ago
Datasets acquisition and processing | Colorectal adenocarcinoma datasets | Breast cancer datasets | Exploring the ExpressionSet data available in mcsurvdata | SessionInfo | References